{"id":622,"date":"2019-05-14T14:18:37","date_gmt":"2019-05-14T21:18:37","guid":{"rendered":"http:\/\/scai.cs.ucla.edu\/?p=622"},"modified":"2019-05-21T17:57:56","modified_gmt":"2019-05-22T00:57:56","slug":"publications-in-2017","status":"publish","type":"post","link":"https:\/\/scai.cs.ucla.edu\/?p=622","title":{"rendered":"Publications in 2017"},"content":{"rendered":"\n<p>-updating in progress-<\/p>\n\n\n\n<p>Chelsea J.-T. Ju, Ruirui Li, Zhengliang Wu, Jyun-Yu Jiang, Zhao Yang and Wei Wang. Fleximer: <a rel=\"noreferrer noopener\" aria-label=\"Accurate Quantification of RNA-Seq via Variable-Length k-mers (opens in a new tab)\" href=\"https:\/\/jyunyu.csie.org\/docs\/pubs\/acmbcb2017paper.pdf\" target=\"_blank\">Accurate Quantification of RNA-Seq via Variable-Length k-mers<\/a>. In proceedings of <em>The 8th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, <\/em>2017.<\/p>\n\n\n\n<p>Wei Wang, Brian Kleakley, Chelsea J.-T Ju, Vincent Kyi, Patrick Tan, Howard Choi, Xinxin Huang, Yichao Zhou, Justin Wood, Din Wang, Alex Bui and Peipei Ping. Aztec: <a href=\"https:\/\/arxiv.org\/pdf\/1706.06087.pdf\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"A Platform to Render Biomedical Software Findable, Accessible, Interoperable, and Reusable (opens in a new tab)\">A Platform to Render Biomedical Software Findable, Accessible, Interoperable, and Reusable<\/a>.<em> CoRR abs\/1706.06087, <\/em>2017. <\/p>\n\n\n\n<p>Chealsea J.-T Ju*, Jyun-Yu Jiang*, Ruirui Li, Zeyu Li and Wei Wang. TahcoRoll:<a rel=\"noreferrer noopener\" aria-label=\" An Efficient Approach for Signature Profiling in Genomic Data through Variable-Length K-mers. (opens in a new tab)\" href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/229708v1\" target=\"_blank\"> An Efficient Approach for Signature Profiling in Genomic Data through Variable-Length K-mers.<\/a> <em>Technical report<\/em>, 2017.<\/p>\n\n\n\n<p>Chelsea J.-T Ju, Zhuangtian Zhao and Wei Wang. <a rel=\"noreferrer noopener\" aria-label=\"Efficient Approach to correct read alignment for pseudogene abundance estimates.  (opens in a new tab)\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27429446\" target=\"_blank\">Efficient Approach to correct read alignment for pseudogene abundance estimates. <\/a><em>IEEE\/ACM transactions on Computation Biology and Bioinformatics (TCBB), 14(3): 522-533<\/em>, 2017.<\/p>\n\n\n\n<p>Seungbae Kim, Jinyoung Han, Seunghyun Yoo, Mario Gerla. <a rel=\"noreferrer noopener\" aria-label=\" (opens in a new tab)\" href=\"https:\/\/www.researchgate.net\/publication\/319438862_How_Are_Social_Influencers_Connected_in_Instagram\" target=\"_blank\">&#8220;How Are Social Influencers Connected in Instagram?&#8221; <\/a><em>Social Informatics (Socinfo)<\/em> 2017, Oxford UK, September 2017.<\/p>\n\n\n\n<p>Nicholas J. Matiasz, Justin Wood, Wei Wang, Alcino J. Silva and William Hsu. <a rel=\"noreferrer noopener\" aria-label=\"Computer-Aided Experiment Planning toward Casual Discovery in Neuroscience (opens in a new tab)\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28243197\" target=\"_blank\">Computer-Aided Experiment Planning toward Casual Discovery in Neuroscience<\/a>. <em>Front. Neuroinform.<\/em> 2017. <\/p>\n\n\n\n<p>Seungbae Kim, Mario Gerla <a rel=\"noreferrer noopener\" aria-label=\" (opens in a new tab)\" href=\"https:\/\/www.researchgate.net\/publication\/317072594_Socio-geo_social_network_routing_protocol_in_delay_tolerant_networks\" target=\"_blank\">&#8220;Socio-Geo: Social Network Routing Protocol in Delay Tolerant Networks,&#8221;<\/a> <em>ICNC<\/em> 2017.<\/p>\n\n\n\n<p>Jyun-Yu Jiang, Pu-Jen Cheng and Wei Wang. <a rel=\"noreferrer noopener\" aria-label=\"Open Source Repository Recommendation in Social Development in Information Retrieval (opens in a new tab)\" href=\"https:\/\/jyunyu.csie.org\/docs\/pubs\/sigir2017paper.pdf\" target=\"_blank\">Open Source Repository Recommendation in Social Development in Information Retrieval<\/a> <em>(SIGIR&#8217; 17), ACM<\/em> 2017.<\/p>\n\n\n\n<p>Justin Wood, Patrick Tan, Wei Wang, Croey W. Arnold. Source-LDA: <a href=\"https:\/\/arxiv.org\/pdf\/1606.00577.pdf\" target=\"_blank\" rel=\"noreferrer noopener\" aria-label=\"Enhancing Probabilistic Topic Models Using Prior Knowledge Sources. (opens in a new tab)\">Enhancing Probabilistic Topic Models Using Prior Knowledge Sources.<\/a> <em>ICDE<\/em> 2017: 411-422 <\/p>\n\n\n\n<p>Mohammad Arifur Rahman, Nathan LaPierre and Huzefa Rangwala. &#8220;<a rel=\"noreferrer noopener\" aria-label=\"Phenotype Prediction from Metagenomic Data Using Clustering Assembly with Multiple Instance Learning (CAMIL) (opens in a new tab)\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28981422\" target=\"_blank\">Phenotype Prediction from Metagenomic Data Using Clustering Assembly with Multiple Instance Learning (CAMIL)<\/a>.&#8221; IEEE\/ACM transactions on computational biology and bioinformatics, Oct. 2017.<\/p>\n\n\n\n<p>Mohammad Arifur Rahman, Nathan LaPierre, Huzefa Rangwala and Daniel Barbara. &#8220;<a rel=\"noreferrer noopener\" aria-label=\"Metagenome sequence clustering with hash-based canopies (opens in a new tab)\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29113561\" target=\"_blank\">Metagenome sequence clustering with hash-based canopies<\/a>.&#8221; <em>Journal of bioinformatics and computational biology, vol. 15, no. 6, pp. 1740006, <\/em>Oct. 2017. <\/p>\n\n\n\n<p>Nicholas J. Matiasz, Justin Wood, Wei Wang, Alcino J. Silva and William Hsu. <a rel=\"noreferrer noopener\" aria-label=\"Translating literature into casual graphs: Toward automated experiment selection (opens in a new tab)\" href=\"https:\/\/ieeexplore.ieee.org\/document\/8217713\" target=\"_blank\">Translating literature into casual graphs: Toward automated experiment selection<\/a>. BIBM 2017: 573-576<\/p>\n\n\n\n<p><\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>-updating in progress- Chelsea J.-T. Ju, Ruirui Li, Zhengliang Wu, Jyun-Yu Jiang, Zhao Yang and Wei Wang. Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mers. In proceedings of The 8th &hellip; <a href=\"https:\/\/scai.cs.ucla.edu\/?p=622\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Publications in 2017<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":11,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-622","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=\/wp\/v2\/posts\/622","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=\/wp\/v2\/users\/11"}],"replies":[{"embeddable":true,"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=622"}],"version-history":[{"count":15,"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=\/wp\/v2\/posts\/622\/revisions"}],"predecessor-version":[{"id":711,"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=\/wp\/v2\/posts\/622\/revisions\/711"}],"wp:attachment":[{"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=622"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=%2Fwp%2Fv2%2Fcategories&post=622"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/scai.cs.ucla.edu\/index.php?rest_route=%2Fwp%2Fv2%2Ftags&post=622"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}