Publications in 2017

-updating in progress-

Chelsea J.-T. Ju, Ruirui Li, Zhengliang Wu, Jyun-Yu Jiang, Zhao Yang and Wei Wang. Fleximer: Accurate Quantification of RNA-Seq via Variable-Length k-mers. In proceedings of The 8th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, 2017.

Wei Wang, Brian Kleakley, Chelsea J.-T Ju, Vincent Kyi, Patrick Tan, Howard Choi, Xinxin Huang, Yichao Zhou, Justin Wood, Din Wang, Alex Bui and Peipei Ping. Aztec: A Platform to Render Biomedical Software Findable, Accessible, Interoperable, and Reusable. CoRR abs/1706.06087, 2017.

Chealsea J.-T Ju*, Jyun-Yu Jiang*, Ruirui Li, Zeyu Li and Wei Wang. TahcoRoll: An Efficient Approach for Signature Profiling in Genomic Data through Variable-Length K-mers. Technical report, 2017.

Chelsea J.-T Ju, Zhuangtian Zhao and Wei Wang. Efficient Approach to correct read alignment for pseudogene abundance estimates. IEEE/ACM transactions on Computation Biology and Bioinformatics (TCBB), 14(3): 522-533, 2017.

Seungbae Kim, Jinyoung Han, Seunghyun Yoo, Mario Gerla. “How Are Social Influencers Connected in Instagram?” Social Informatics (Socinfo) 2017, Oxford UK, September 2017.

Nicholas J. Matiasz, Justin Wood, Wei Wang, Alcino J. Silva and William Hsu. Computer-Aided Experiment Planning toward Casual Discovery in Neuroscience. Front. Neuroinform. 2017.

Seungbae Kim, Mario Gerla “Socio-Geo: Social Network Routing Protocol in Delay Tolerant Networks,” ICNC 2017.

Jyun-Yu Jiang, Pu-Jen Cheng and Wei Wang. Open Source Repository Recommendation in Social Development in Information Retrieval (SIGIR’ 17), ACM 2017.

Justin Wood, Patrick Tan, Wei Wang, Croey W. Arnold. Source-LDA: Enhancing Probabilistic Topic Models Using Prior Knowledge Sources. ICDE 2017: 411-422

Mohammad Arifur Rahman, Nathan LaPierre and Huzefa Rangwala. “Phenotype Prediction from Metagenomic Data Using Clustering Assembly with Multiple Instance Learning (CAMIL).” IEEE/ACM transactions on computational biology and bioinformatics, Oct. 2017.

Mohammad Arifur Rahman, Nathan LaPierre, Huzefa Rangwala and Daniel Barbara. “Metagenome sequence clustering with hash-based canopies.” Journal of bioinformatics and computational biology, vol. 15, no. 6, pp. 1740006, Oct. 2017.

Nicholas J. Matiasz, Justin Wood, Wei Wang, Alcino J. Silva and William Hsu. Translating literature into casual graphs: Toward automated experiment selection. BIBM 2017: 573-576

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